doc. Mgr. David Bednář, Ph.D.

2018

• Computer-assisted engineering of hyperstable fibroblast growth factor 2

  DVOŘÁK Pavel BEDNÁŘ David VAŇÁČEK Pavel BÁLEK Lukáš EISELLEOVÁ Lívia ŠTĚPÁNKOVÁ Veronika ŠEBESTOVÁ Eva BOSÁKOVÁ Michaela KONEČNÁ Žaneta MAZURENKO Stanislav KUNKA Antonín VÁŇOVÁ Tereza ZOUFALOVÁ Karolína CHALOUPKOVÁ Radka BREZOVSKÝ Jan KREJČÍ Pavel PROKOP Zbyněk DVOŘÁK Petr DAMBORSKÝ Jiří

  Article in Periodical

  Biotechnology and Bioengineering, year: 2018, volume: 115, edition: 4, DOI

• Conformational changes allow processing of bulky substrates by a haloalkane dehalogenase with a small and buried active site

  KOKKONEN Piia Pauliina BEDNÁŘ David DOČKALOVÁ Veronika PROKOP Zbyněk DAMBORSKÝ Jiří

  Article in Periodical

  Journal of Biological Chemistry, year: 2018, volume: 293, edition: 29, DOI

• Engineering of enzyme gating driven by molecular dynamics, transient kinetics, and single molecule spectroscopy

  PROKOP Zbyněk GHOSE A. KOKKONEN Piia Pauliina SYKORA J. BEDNÁŘ David AMARO M. NEVOLOVÁ Šárka HOF M. DAMBORSKÝ Jiří

  Conference abstract

  Year: 2018, type: Conference abstract

• Evolutionary Analysis As a Powerful Complement to Energy Calculations for Protein Stabilization

  BEERENS Koen MAZURENKO Stanislav KUNKA Antonín MARQUES Sérgio Manuel HANSEN N. MUSIL Miloš CHALOUPKOVÁ Radka WATERMAN Jitka BREZOVSKÝ Jan BEDNÁŘ David PROKOP Zbyněk DAMBORSKÝ Jiří

  Article in Periodical

  ACS Catalysis, year: 2018, volume: 8, edition: 10, DOI

• HotSpot Wizard 3.0: web server for automated design of mutations and smart libraries based on sequence input information

  SUMBALOVÁ Lenka ŠTOURAČ Jan MARTÍNEK Tomáš BEDNÁŘ David DAMBORSKÝ Jiří

  Article in Periodical

  Nucleic Acids Research, year: 2018, volume: 46, edition: W1, DOI

• Molecular Gating of an Engineered Enzyme Captured in Real Time

  KOKKONEN Piia Pauliina SYKORA J. PROKOP Zbyněk GHOSE A. BEDNÁŘ David AMARO M. BEERENS Koen NEVOLOVÁ Šárka SLÁNSKÁ Michaela BREZOVSKÝ Jan DAMBORSKÝ Jiří HOF M.

  Article in Periodical

  Journal of the American Chemical Society, year: 2018, volume: 140, edition: 51, DOI

2017

• CaverDock 1.0

  FILIPOVIČ Jiří VÁVRA Ondřej PLHÁK Jan BEDNÁŘ David MARQUES Sérgio Manuel BREZOVSKÝ Jan MATYSKA Luděk DAMBORSKÝ Jiří

  Software

  Year: 2017

• Different Structural Origins of the Enantioselectivity of Haloalkane Dehalogenases toward Linear beta-Haloalkanes: Open–Solvated versus Occluded–Desolvated Active Sites

  LIŠKOVÁ Veronika ŠTĚPÁNKOVÁ Veronika BEDNÁŘ David BREZOVSKÝ Jan PROKOP Zbyněk CHALOUPKOVÁ Radka DAMBORSKÝ Jiří

  Article in Periodical

  Angewandte Chemie International Edition, year: 2017, volume: 56, edition: 17, DOI

• FireProt 1.0

  MUSIL Miloš ŠTOURAČ Jan BENDL Jaroslav BREZOVSKÝ Jan PROKOP Zbyněk ZENDULKA J. MARTÍNEK Tomáš BEDNÁŘ David DAMBORSKÝ Jiří

  Software

  Year: 2017

• FireProt: Web Server for Automated Design of Thermostable Proteins

  MUSIL Miloš ŠTOURAČ Jan BENDL Jaroslav BREZOVSKÝ Jan PROKOP Zbyněk ZENDULKA Jaroslav MARTÍNEK Tomáš BEDNÁŘ David DAMBORSKÝ Jiří

  Article in Periodical

  Nucleic Acids Research, year: 2017, volume: 45, edition: W1, DOI