prof. RNDr. Karel Berka, Ph.D.

2018

• ChannelsDB: database of biomacromolecular tunnels and pores

  PRAVDA Lukáš SEHNAL David SVOBODOVÁ VAŘEKOVÁ Radka NAVRÁTILOVÁ Veronika TOUŠEK Dominik BERKA Karel OTYEPKA Michal KOČA Jaroslav

  Article in Periodical

  Nucleic Acids Research, year: 2018, volume: 46, edition: D1, DOI

• MOLEonline: a web-based tool for analyzing channels, tunnels and pores (2018 update)

  PRAVDA Lukáš SEHNAL David TOUŠEK Dominik NAVRÁTILOVÁ Veronika BAZGIER Václav BERKA Karel SVOBODOVÁ VAŘEKOVÁ Radka KOČA Jaroslav OTYEPKA Michal

  Article in Periodical

  Nucleic Acids Research, year: 2018, volume: 46, edition: W1, DOI

• Protein family based 2D Diagrams of Secondary Structure Elements

  HUTAŘOVÁ VAŘEKOVÁ Ivana HUTAŘ Jan MIDLIK Adam NAVRÁTILOVÁ Veronika SVOBODOVÁ VAŘEKOVÁ Radka BERKA Karel

  Conference abstract

  Year: 2018, type: Conference abstract

• Secondary Structure Elements-Annotations and Schematic 2D Visualizations Stable for Individual Protein Families

  SVOBODOVÁ VAŘEKOVÁ Radka MIDLIK Adam HUTAŘOVÁ VAŘEKOVÁ Ivana HUTAŘ Jan NAVRÁTILOVÁ Veronika KOČA Jaroslav BERKA Karel

  Conference abstract

  Year: 2018, type: Conference abstract

2017

• Cytochrome P450 structure anatomy – recognition and analysis of secondary structure elements

  MIDLIK Adam SVOBODOVÁ VAŘEKOVÁ Radka NAVRÁTILOVÁ Veronika BERKA Karel KOČA Jaroslav

  Conference abstract

  Year: 2017, type: Conference abstract

• LiteMol suite: interactive web-based visualization of large-scale macromolecular structure data

  SEHNAL David DESHPANDE Mandar SVOBODOVÁ VAŘEKOVÁ Radka MIR Saqib BERKA Karel MIDLIK Adam PRAVDA Lukáš VELANKAR Sameer KOČA Jaroslav

  Article in Periodical

  Nature Methods, year: 2017, volume: 14, edition: 12, DOI

• Mapping and 2D visualization of secondary structure elements in cytochromes

  HUTAŘOVÁ VAŘEKOVÁ Ivana HUTAŘ Jan SVOBODOVÁ VAŘEKOVÁ Radka BERKA Karel

  Conference abstract

  Year: 2017, type: Conference abstract

2016

• Automatická anotácia sekundárnych štruktúr v cytochrómoch P450 a hodnotenie ich štruktúrnej podobnosti

  MIDLIK Adam BERKA Karel SVOBODOVÁ VAŘEKOVÁ Radka KOČA Jaroslav

  Conference abstract

  Year: 2016, type: Conference abstract

• Structural Bioinformatics Tools for Drug Design: Extraction of Biologically Relevant Information from Structural Databases

  KOČA Jaroslav SVOBODOVÁ VAŘEKOVÁ Radka PRAVDA Lukáš BERKA Karel GEIDL Stanislav SEHNAL David OTYEPKA Michal

  Monograph

  Year: 2016, edition: Vyd. 1., number of pages: 144 s.

2015

• Anatomy of protein channels

  PRAVDA Lukáš BERKA Karel SVOBODOVÁ VAŘEKOVÁ Radka SEHNAL David IONESCU Crina-Maria OTYEPKA Michal KOČA Jaroslav

  Conference abstract

  Year: 2015, type: Conference abstract