RNDr. Ondřej Schindler, Ph.D.

Junior researcher, Biological Data Management and Analysis Core Facility

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Basic information

Type

Total number of publications: 23

2022

Alphacharges - a web service for calculating QM-like partial atomic charges for AlphaFold proteins

SCHINDLER Ondřej RAČEK Tomáš SVOBODOVÁ Radka

Appeared in Conference without Proceedings

Year: 2022, type: Appeared in Conference without Proceedings
Atomic Charge Calculator II – a web service for calculating partial atomic charges

RAČEK Tomáš SCHINDLER Ondřej PTÁČNÍKOVÁ Lenka SVOBODOVÁ Radka

Conference abstract

Year: 2022, type: Conference abstract
Prediction of QM-like partial atomic charges for alphafold

SCHINDLER Ondřej RAČEK Tomáš SVOBODOVÁ Radka

Appeared in Conference without Proceedings

Year: 2022, type: Appeared in Conference without Proceedings
QM-like partial atomic charges for AlphaFold available online

SCHINDLER Ondřej RAČEK Tomáš JELÍNEK Kamil SVOBODOVÁ Radka

Conference abstract

Year: 2022, type: Conference abstract

2021

COMPUTER-AIDED MODEL DESIGN OF EMPIRICAL METHODS FOR CALCULATING PARTIAL ATOMIC CHARGES

RAČEK Tomáš SCHINDLER Ondřej

Article in Proceedings

MODELLING AND SIMULATION 2021: 35TH ANNUAL EUROPEAN SIMULATION AND MODELLING CONFERENCE 2021 (ESM 2021), year: 2021
Optimized SQE atomic charges for peptides accessible via a web application

SCHINDLER Ondřej RAČEK Tomáš MARŠAVELSKI Aleksandra KOČA Jaroslav BERKA Karel SVOBODOVÁ Radka

Article in Periodical

Journal of Cheminformatics, year: 2021, volume: 13, edition: 1, DOI
Partial atomic charges for proteins

SCHINDLER Ondřej RAČEK Tomáš MARŠAVELSKI Aleksandra SVOBODOVÁ Radka KOČA Jaroslav

Appeared in Conference without Proceedings

Year: 2021, type: Appeared in Conference without Proceedings
QM-like partial atomic charges for proteins available online

SCHINDLER Ondřej RAČEK Tomáš SVOBODOVÁ Radka BERKA Karel

Conference abstract

Year: 2021, type: Conference abstract

2020

Atomic Charge Calculator II: web-based tool for the calculation of partial atomic charges

RAČEK Tomáš SCHINDLER Ondřej TOUŠEK Dominik HORSKÝ Vladimír BERKA Karel KOČA Jaroslav SVOBODOVÁ Radka

Article in Periodical

Nucleic acids research, year: 2020, volume: 48, edition: W1, DOI
SQE charge calculation and its applicability for proteins

SCHINDLER Ondřej RAČEK Tomáš SVOBODOVÁ Radka BERKA Karel KOČA Jaroslav

Conference abstract

Year: 2020, type: Conference abstract