Helge Hecht, Ph.D., M.Sc.

2024

• Reproducible MS/MS library cleaning pipeline in matchms

  DE JONGE Niek F. HECHT Helge STROBEL Michael WANG Mingxun VAN DER HOOFT Justin J. J. HUBER Florian

  Article in Periodical

  Journal of Cheminformatics, year: 2024, volume: 16, edition: 1, DOI

• The Galaxy platform for accessible, reproducible, and collaborative data analyses: 2024 update

  ABUEG Linelle Ann L. AFGAN Enis ALLART Olivier WAN Ahmed H. A. BACON W. Endi A. BAKER Dannon BASSETTI Madeline BATUT Berenice BERNT Matthias BLANKENBERG Daniel BOMBARELY Aureliano BRETAUDEAU Anthony BROMHEAD Catherine J. BURKE Melissa L. CAPON Patrick K. CECH Martin CHAVERO-DIEZ Maria CHILTON John M. COLLINS Tyler J. COPPENS Frederik CORAOR Nate CUCCURU Gianmauro CUMBO Fabio DAVIS John DE GEEST F. Paul DE KONING Willem DEMKO Martin DESANTO Assunta BEGINES Jose Manuel Dominguez DOYLE Maria A. DROESBEKE Bert ERXLEBEN-EGGENHOFER Anika FOLL Melanie C. FORMENTI Giulio FOUILLOUX Anne GANGAZHE Rendani GENTHON Tanguy GOECKS Jeremy BELTRAN Alejandra N. Gonzalez GOONASEKERA Nuwan A. GOUE Nadia GRIFFIN Timothy J. GRUNING Bjorn A. GUERLER Aysam GUNDERSEN Sveinung GUSTAFSSON Ove Johan Ragnar HALL Christina HARROP Thomas W. HECHT Helge HEIDARI Alireza HEISNER Tillman HEYL Florian HILTEMANN Saskia HOTZ Hans-Rudolf HYDE Cameron J. JAGTAP Pratik D. JAKIELA Julia JOHNSON James E. JOSHI Jayadev JOSSE Marie JUM'AH Khaled KALAS Matus KAMIENIECKA Katarzyna KAYIKCIOGLU Tunc KONKOL Markus KOSTRYKIN Leonid KUCHER Natalie KUMAR Anup KUNTZ Mira LARIVIERE Delphine LAZARUS Ross LE BRAS Yvan LE CORGUILLE Gildas LEE Justin LEO Simone LIBORIO Leandro LIBOUBAN Romane TABERNERO David Lopez LOPEZ-DELISLE Lucille LOS Laila S. MAHMOUD Alexandru MAKUNIN Igor MARIN Pierre MEHTA Subina MOK Winnie MORENO Pablo A. MORIER-GENOUD Francois MOSHER Stephen MUELLER Teresa NASR Engy NEKRUTENKO Anton NELSON Tiffanie M. OBA Asime J. OSTROVSKY Alexander POLUNINA Polina V. POTERLOWICZ Krzysztof PRICE Elliott James PRICE Gareth R. RASCHE Helena RAUBENOLT Bryan ROYAUX Coline SARGENT Luke SAVAGE Michelle T. SAVCHENKO Volodymyr SAVCHENKO Denys SCHATZ Michael C. SEGUINEAU Pauline SERRANO-SOLANO Beatriz SORANZO Nicola SRIKAKULAM Sanjay Kumar SUDERMAN Keith SYME Anna E. TANGARO Marco Antonio EDDS Jonathan A. T. EKMAN Mehmet T. THANG Wai Cheng THANKI Anil S. UHL Michael VAN DEN BEEK Marius VARSHNEY Deepti VESSIO Jenn VIDEM Pavankumar GREG Von Kuster WATSON Gregory R. WHITAKER-ALLEN Natalie WINTER Uwe WOLSTENCROFT Martin ZAMBELLI Federico ZIEREP Paul ZOABI Rand

  Article in Periodical

  Nucleic acids research, year: 2024, volume: 52, edition: W1, DOI

• The Proteomics Standards Initiative Standardized Formats for Spectral Libraries and Fragment Ion Peak Annotations: mzSpecLib and mzPAF

  KLEIN Joshua LAM Henry MAK Tytus D. BITTREMIEUX Wout PEREZ-RIVEROL Yasset GABRIELS Ralf SHOFSTAHL Jim HECHT Helge BINZ Pierre-Alain KAWANO Shin VAN DEN BOSSCHE Tim CARVER Jeremy NEELY Benjamin A. MENDOZA Luis SUOMI Tomi CLAEYS Tine PAYNE Thomas SCHULTE Douwe SUN Zhi HOFFMANN Nils ZHU Yunping NEUMANN Steffen JONES Andrew R. BANDEIRA Nuno VIZCAINO Juan Antonio DEUTSCH Eric W.

  Article in Periodical

  Analytical chemistry, year: 2024, volume: 96, edition: 46, DOI

2022

• MSMetaEnhancer: A Python package for mass spectra metadata annotation

  TROJÁK Matej HECHT Helge ČECH Martin PRICE Elliott James

  Article in Periodical

  Journal of Open Source Software, year: 2022, volume: 7, edition: 79, DOI

• RIAssigner: A package for gas chromatographic retention index calculation

  HECHT Helge SKORYK Maksym ČECH Martin PRICE Elliott James

  Article in Periodical

  Journal of Open Source Software, year: 2022, volume: 7, edition: 75, DOI

2020

• Disentangled Autoencoder for Cross-Stain Feature Extraction in Pathology Image Analysis

  HECHT Helge POPOVICI Vlad MHD HASAN Sarhan SARHAN Hasan POPOVICI Vlad

  Article in Periodical

  Applied Sciences, year: 2020, volume: 10, edition: 18, DOI