doc. Mgr. David Bednář, Ph.D.

2025

• Quantum computing for faster enzyme discovery and engineering

  DAMBORSKÝ Jiří KOUBA Petr SIVIC Josef VAŠINA Michal BEDNÁŘ David MAZURENKO Stanislav

  Article in Periodical

  Nature Catalysis, year: 2025, volume: 8, edition: 9, DOI

• Refining the AOP for retinoid-induced teratogenicity: Insights into RAR/ RXR overactivation and RXR cross-talk with retinoic acid and thyroid hormone signaling

  PHAN Audrey Xuan Anh PESCE Elise BAUMANN Lisa POLAKOVIČOVÁ Petra BEDNÁŘ David SMUTNÁ Marie NOVÁK Jiří HILSCHEROVÁ Klára

  Article in Periodical

  Aquatic toxicology, year: 2025, volume: 289, edition: December 2025, DOI

• Visual Support for the Loop Grafting Workflow on Proteins

  OPÁLENÝ Filip ULBRICH Pavol PLANAS IGLESIAS Joan BYŠKA Jan ŠTOURAČ Jan BEDNÁŘ David FURMANOVÁ Katarína KOZLÍKOVÁ Barbora

  Article in Periodical

  IEEE Transactions on Visualization and Computer Graphics, year: 2025, volume: 31, edition: 1, DOI

2024

• A computational workflow for analysis of missense mutations in precision oncology

  KHAN Rayyan Tariq POKORNÁ Petra DVORSKÝ Jan BORKO Simeon AREFIEV Ihor PLANAS IGLESIAS Joan DOBIÁŠ Adam RANGEL PAMPLONA PIZARRO PINTO José Gaspar SZOTKOWSKÁ Veronika ŠTĚRBA Jaroslav SLABÝ Ondřej DAMBORSKÝ Jiří MAZURENKO Stanislav BEDNÁŘ David

  Article in Periodical

  JOURNAL OF CHEMINFORMATICS, year: 2024, volume: 16, edition: 1, DOI

• AggreProt: a web server for predicting and engineering aggregation prone regions in proteins

  PLANAS IGLESIAS Joan BORKO Simeon SWIATKOWSKI Jan ELIAS Matej HAVLÁSEK Martin SALAMON Ondrej GRAKOVA Ekaterina KUNKA Antonín MARTINOVIC Tomas DAMBORSKÝ Jiří MARTINOVIC Jan BEDNÁŘ David

  Article in Periodical

  Nucleic Acids Research, year: 2024, volume: 52, edition: W1, DOI

• Analysis of mutations in precision oncology using the automated, accurate, and user-friendly web tool PredictONCO

  KHAN Rayyan Tariq POKORNÁ Petra DVORSKÝ Jan BORKO Simeon DOBIÁŠ Adam PLANAS IGLESIAS Joan MAZURENKO Stanislav AREFIEV Ihor RANGEL PAMPLONA PIZARRO PINTO José Gaspar SZOTKOWSKÁ Veronika ŠTĚRBA Jaroslav DAMBORSKÝ Jiří SLABÝ Ondřej BEDNÁŘ David

  Article in Periodical

  Computational and Structural Biotechnology Journal, year: 2024, volume: 24, edition: December 2024, DOI

• Azobenzene-Based Photoswitchable Substrates for Advanced Mechanistic Studies of Model Haloalkane Dehalogenase Enzyme Family

  SLÁNSKÁ Michaela ŠTACKOVÁ Lenka MARQUES Sérgio Manuel ŠTACKO Peter MARTÍNEK Marek JÍLEK Luboš TOUL Martin DAMBORSKÝ Jiří BEDNÁŘ David KLÁN Petr PROKOP Zbyněk

  Article in Periodical

  ACS Catalysis, year: 2024, volume: 14, edition: 15, DOI

• BenchStab: A tool for automated querying of web-based stability predictors

  VELECKÝ Jan BEREZNÝ Matej MUSIL Miloš DAMBORSKÝ Jiří BEDNÁŘ David MAZURENKO Stanislav

  Article in Periodical

  BIOINFORMATICS, year: 2024, volume: 40, edition: 9, DOI

• Computer-aided engineering of stabilized fibroblast growth factor 21

  DE LA BOURDONNAYE Gabin GHAZALOVÁ Tereza FOJTÍK Petr KUTALKOVA Katerina BEDNÁŘ David DAMBORSKÝ Jiří ROTREKL Vladimír STEPANKOVA Veronika CHALOUPKOVÁ Radka

  Article in Periodical

  Computational and Structural Biotechnology Journal, year: 2024, volume: 23, edition: December 2024, DOI

• CoVAMPnet: Comparative Markov State Analysis for Studying Effects of Drug Candidates on Disordered Biomolecules

  MARQUES Sérgio Manuel KOUBA Petr LEGRAND Anthony Thomas P SEDLAR Jiri DISSON Lucas PLANAS IGLESIAS Joan SANUSI Zainab Kemi KUNKA Antonín DAMBORSKÝ Jiří PAJDLA Tomas PROKOP Zbyněk MAZURENKO Stanislav SIVIC Josef BEDNÁŘ David

  Article in Periodical

  JACS AU, year: 2024, volume: 4, edition: 6, DOI