prof. RNDr. Jiří Šponer, DrSc.

2014

• Mechanical Model of DNA Allostery

  DRŠATA Tomáš ZGARBOVÁ Marie ŠPAČKOVÁ Naděžda JUREČKA Petr ŠPONER Jiří LANKAŠ Filip

  Article in Periodical

  Journal of Physical Chemistry Letters, year: 2014, volume: 5, edition: 21, DOI

• Mechanical properties of symmetric and asymmetric DNA A-tracts: implications for looping and nucleosome positioning

  DRSATA Tomáš ŠPAČKOVÁ Naďa JUREČKA Petr ZGARBOVÁ Marie ŠPONER Jiří LANKAŠ Filip

  Article in Periodical

  Nucleic Acids Research, year: 2014, volume: 42, edition: 11, DOI

• Molecular Dynamics Simulations of Nucleic Acids. From Tetranucleotides to the Ribosome

  ŠPONER Jiří BANÁŠ Pavel JUREČKA Petr ZGARBOVÁ Marie KÜHROVÁ Petra HAVRILA Marek KREPL Miroslav STADLBAUER Petr OTYEPKA Michal

  Article in Periodical

  The Journal of Physical Chemistry Letters, year: 2014, volume: 5, edition: 10, DOI

• Molecular Mechanism of Diaminomaleonitrile to Diaminofumaronitrile Photoisomerization: An Intermediate Step in the Prebiotic Formation of Purine Nucleobases

  SZABLA Rafal Kazimierz GÓRA Robert W. ŠPONER Jiří ŠPONEROVÁ Judit

  Article in Periodical

  Chemistry - A European Journal, year: 2014, volume: 20, edition: 9, DOI

• muABC: a systematic microsecond molecular dynamics study of tetranucleotide sequence effects in B-DNA

  PASI Marco MADDOCKS John H. BEVERIDGE David BISHOP Thomas C. CASE David A. CHEATHAM III. Thomas DANS Pablo D. JAYARAM B. LANKAŠ Filip LAUGHTON Charles MITCHELL Jonathan OSMAN Roman OROZCO Modesto PÉREZ Alberto PETKEVIČIÜTÉ Daiva ŠPAČKOVÁ Naďa ŠPONER Jiří ZAKRZEWSKA Krystyna LAVERY Richard

  Article in Periodical

  Nucleic Acids Research, year: 2014, volume: 42, edition: 19, DOI

• QM Computations on Complete Nucleic Acids Building Blocks: Analysis of the Sarcin-Ricin RNA Motif Using DFT-D3, HF-3c, PM6-D3H, and MM Approaches

  KRUSE Holger HAVRILA Marek ŠPONER Jiří

  Article in Periodical

  Journal of Chemical Theory and Computation, year: 2014, volume: 10, edition: 6, DOI

• Role of S-turn2 in the Structure, Dynamics, and Function of Mitochondrial Ribosomal A-Site. A Bioinformatics and Molecular Dynamics Simulation Study

  PANECKA Joanna HAVRILA Marek RÉBLOVÁ Kamila ŠPONER Jiří TRYLSKA Joanna

  Article in Periodical

  Journal of Physical Chemistry B, year: 2014, volume: 118, edition: 24, DOI

• Room temperature spontaneous conversion of OCS to CO2 on the anatase TiO2 surface

  CIVIŠ Svatopluk FERUS Martin ŠPONEROVÁ Judit ŠPONER Jiří KAVAN Ladislav ZUKALOVÁ Markéta

  Article in Periodical

  Chemical Communications, year: 2014, volume: 50, edition: 57, DOI

• Solvent effects on the photochemistry of 4-aminoimidazole-5-carbonitrile, a prebiotically plausible precursor of purines

  SZABLA Rafal Kazimierz ŠPONEROVÁ Judit ŠPONER Jiří SOBOLEWSKI Andrzej GÓRA Robert W.

  Article in Periodical

  Physical Chemistry Chemical Physics, year: 2014, volume: 16, edition: 33, DOI

• Triplex intermediates in folding of human telomeric quadruplexes probed by microsecond-scale molecular dynamics simulations

  STADLBAUER Petr TRANTÍREK Lukáš CHEATHAM III. Thomas E. KOČA Jaroslav ŠPONER Jiří

  Article in Periodical

  Biochimie, year: 2014, volume: 105c, edition: October, DOI