prof. RNDr. Jiří Šponer, DrSc.

2001

• Molecular dynamics of the frame-shifting pseudoknot from beet western yellows virus: The role of non- Watson-Crick base-pairing, ordered hydration, cation binding and base mutations on stability and unfolding

  CSASZAR Kristina ŠPAČKOVÁ Naděžda ŠTEFL Richard ŠPONER Jiří LEONTIS Neocles B.

  Article in Periodical

  Journal of Molecular Biology, year: 2001, volume: 313, edition: 5

• Solution structure of the dodecamer d-(CATGGGCC-CATG)(2) is B-DNA. Experimental and molecular dynamics study

  DORNBERGER Utz ŠPAČKOVÁ Naděžda WALTER Axel GOLLMICK Friedrich A. ŠPONER Jiří FRITZSCHE hartmut

  Article in Periodical

  Journal of Biomolecular Structure and Dynamics, year: 2001, volume: 19, edition: 1

• Structural dynamics and cation interactions of DNA quadruplex molecules containing mixed guanine/cytosine quartets revealed by large-scale MD simulations

  ŠPAČKOVÁ Naděžda BERGER Imre ŠPONER Jiří

  Article in Periodical

  Journal of the American Chemical Society, year: 2001, volume: 123, edition: 14

1999

• Nanosecond molecular dynamics simulations of parallel and antiparallel guanine quadruplex DNA molecules

  ŠPAČKOVÁ Naděžda BERGER Imre ŠPONER Jiří

  Article in Periodical

  The Journal of the American Chemical Society, year: 1999, volume: roč. 121, edition: 23

1998

• Molecular dynamics of hemiprotonated intercalated four-stranded i-DNA: stable trajectories on a nanosecond scale

  ŠPAČKOVÁ Naděžda BERGER Imre EGLI Martin ŠPONER Jiří

  Article in Periodical

  The Journal of the American Chemical Society, year: 1998, volume: roč. 120, edition: 24