prof. RNDr. Jiří Šponer, DrSc.

2007

• Elastic properties of ribosomal RNA building blocks: molecular dynamics of the GTPase-associated center rRNA

  RÁZGA Filip KOČA Jaroslav MOKDAD Ali ŠPONER Jiří

  Article in Periodical

  Nucleic Acids Research, year: 2007, volume: 35, edition: 12

• Elastic properties of ribosomal RNA building blocks: Molecular dynamics study

  RÁZGA Filip KOČA Jaroslav ŠPONER Jiří

  Article in Proceedings

  Strukturní biofyzika makromolekul II, year: 2007

• Human telomeric G-DNA - a test example for force field adjustment

  FADRNÁ Eva ŠPAČKOVÁ Naděžda SVOZIL Daniel ŠPONER Jiří KOČA Jaroslav

  Article in Proceedings

  Journal Of Biomolecular Structure and Dynamics, year: 2007

• Molecular dynamics simulations of quadruplex DNA.

  ŠPONER Jiří

  Article in Proceedings

  First international meeting on quadruplex DNA,, year: 2007

• Molecular dynamics simulations of RNA: An in silico single molecule approach

  MCDOWELL Elizabeth ŠPAČKOVÁ Naďa ŠPONER Jiří WALTER Nils

  Article in Periodical

  BIOPOLYMERS, year: 2007, volume: 85, edition: 2

• Refinement of the AMBER force field for nucleic acids: Improving the description of alfa/gamma conformers

  PEREZ Alberto MARCHAN Ivan SVOZIL Daniel ŠPONER Jiří CHEATHAM Thomas LAUGHTON Charles

  Article in Periodical

  Biophysical Journal, year: 2007, volume: 92, edition: 11

• Ribosomal RNA motifs and segments have salient flexibilities

  ŠPONER Jiří MOKDAD Ali RÁZGA Filip RÉBLOVÁ Kamila ŠPAČKOVÁ Naděžda

  Article in Proceedings

  Journal Of Biomolecular Structure and Dynamics, year: 2007

• Spectroscopic and Theoretical Insights into Sequence Effects of Aminofluorene-Induced Conformational Heterogeneity and Nucleotide Excision Repair

  MENENI Srinivasa SHELL Steven GAO Lan JURECKA Petr LEE Wang SPONER Jiri ZOU Yue CHIARELLI Paul CHO Bongsup

  Article in Periodical

  Biochemistry, year: 2007, volume: 46/2007, edition: 40

• Study of structure, dynamics and local elasticity of 16S rRNA Helix 44 using molecular dynamics methods.

  RÉBLOVÁ Kamila LANKAS Filip SPONER Jiri

  Article in Proceedings

  Journal Of Biomolecular Structure and Dynamics, year: 2007

• Theoretical study on structure, stability, and electronic properties of the guanine-Zn-cytosine base pair in M-DNA

  FUENTES-CABRERA Miguel SUMPTER Bobby SPONER Judit SPONER Jiri PETIT Leon WELLS Jack

  Article in Periodical

  JOURNAL OF PHYSICAL CHEMISTRY B, year: 2007, volume: 111, edition: 4