prof. RNDr. Jiří Šponer, DrSc.

2006

• Structure and dynamics of functional RNAs: 3 microseconds of explicit solvent MD

  ŠPONER Jiří

  Article in Proceedings

  2006 ISQBP president's meeting, year: 2006

• Structure and dynamics of ribosomal RNA: The role of molecular interactions

  ŠPONER Jiří

  Article in Proceedings

  2006 IBBI, year: 2006

• Structure and dynamics of RNA and DNA. Advanced computational studies.

  ŠPONER Jiří

  Article in Proceedings

  Materials Structure in chemistry, biology, physics and technology, year: 2006

• Structure, Dynamics, and Elasticity of Free 16S rRNA Helix 44 Studied by Molecular Dynamics Simulations

  RÉBLOVÁ Kamila LANKAŠ Filip RÁZGA Filip KRASOVSKA Maryna V KOČA Jaroslav ŠPONER Jiří

  Article in Periodical

  Biopolymers, year: 2006, volume: 82, edition: 5

• Trapped water molecules are essential to structural dynamics and function of a ribozyme

  RHODES Maria REBLOVA Kamila NILS Walter SPONER Jiri

  Article in Periodical

  The Proceedings of the National Academy of Sciences, year: 2006, volume: 103, edition: 36

2005

• Elbow-like motions in Ribosomal Kink-turns: The role of the second A-minor motif and Nominally unpaired bases

  RÁZGA Filip KOČA Jaroslav LEONTIS Neocles B. ŠPONER Jiří

  Article in Proceedings

  Journal Of Biomolecular Structure and Dynamics, year: 2005

• Hinge-Like Motions in RNA Kink-Turns: The Role of the Second A-minor Motif and Nominally Unpaired Bases

  RÁZGA Filip KOČA Jaroslav ŠPONER Jiří LEONTIS Neocles B.

  Article in Periodical

  Biophysical Journal, year: 2005, volume: 88, edition: 5

• Influence of Ion Parameters On Molecular Dynamics and/or Free Energy Calculation

  FADRNÁ Eva KOČA Jaroslav ŠPONER Jiří

  Article in Proceedings

  Workshop on Modelling interactions in Biomolecules II, year: 2005

• Non-Watson-Crick base pairing in RNA. Quantum chemical analysis of the cis Watson-Crick/sugar edge base pair family

  ŠPONER Judit E ŠPAČKOVÁ Naděžda KULHÁNEK Petr LESZCZYNSKI Jerzy ŠPONER Jiří

  Article in Periodical

  JOURNAL OF PHYSICAL CHEMISTRY A, year: 2005, volume: 109, edition: 10

• Ribosomal RNA Kink-turn motif - a flexible molecular hinge

  RÁZGA Filip ŠPAČKOVÁ Naděžda RÉBLOVÁ Kamila KOČA Jaroslav LEONTIS Neocles B. ŠPONER Jiří

  Article in Proceedings

  Materials Structure in chemistry, biology, physics and technology, year: 2005