prof. RNDr. Jiří Šponer, DrSc.

2012

• How does hydroxyl introduction influence the double helical structure: the stabilization of an altritol nucleic acid: ribonucleic acid duplex

  OVAERE Margriet ŠPONER Jiří ŠPONEROVÁ Judit HERDEWIJN Piet VAN MEERVELT Luc

  Article in Periodical

  Nucleic Acids Research, year: 2012, volume: 40, edition: 15, DOI

• Chemical Shifts in Nucleic Acids Studied by Density Functional Theory Calculations and Comparison with Experiment

  FONVILLE Judith M SWART Marcel VOKACOVA Zuzana SYCHROVSKY Vladimir ŠPONEROVÁ Judit ŠPONER Jiří HILBERS Cornelis W BICKELHAUPT F Matthias WIJMENGA Sybren S

  Article in Periodical

  Chemistry - A European Journal, year: 2012, volume: 18, edition: 39, DOI

• Is formamide nature’s choice to create life? Comment on the paper “Formamide and the origin of life” by Raffaele Saladino et al.

  ŠPONEROVÁ Judit ŠPONER Jiří

  Article in Periodical

  PHYSICS OF LIFE REVIEWS, year: 2012, volume: 9, edition: 1, DOI

• Molecular dynamics simulations of G-DNA and perspectives on the simulation of nucleic acid structures

  ŠPONER Jiří CANG Xiaohui CHEATHAM Thomas E

  Article in Periodical

  Methods, year: 2012, volume: 57, edition: 1, DOI

• Molecular Dynamics Simulations of RNA Molecules

  ŠPONER Jiří OTYEPKA Michal BANÁŠ Pavel RÉBLOVÁ Kamila WALTER Nils

  Chapter of a book

  Innovations in Biomolecular Modeling and Simulations, edition: 1. vydání, year: 2012, number of pages: 27 s.

• Molecular Mechanism of preQ(1) Riboswitch Action: A Molecular Dynamics Study

  BANÁŠ Pavel SKLENOVSKY Petr WEDEKIND Joseph E ŠPONER Jiří OTYEPKA Michal

  Article in Periodical

  Journal of Physical Chemistry B, year: 2012, volume: 116, edition: 42, DOI

• On the Road from Formamide Ices to Nucleobases: IR-Spectroscopic Observation of a Direct Reaction between Cyano Radicals and Formamide in a High-Energy Impact Event

  FERUS Martin CIVIS Svatopluk MLÁDEK Arnošt ŠPONER Jiří JUHA Libor ŠPONEROVÁ Judit

  Article in Periodical

  Journal of the American Chemical Society, year: 2012, volume: 134, edition: 51, DOI

• Reference Simulations of Noncanonical Nucleic Acids with Different chi Variants of the AMBER Force Field: Quadruplex DNA, Quadruplex RNA, and Z-DNA

  KREPL Miroslav ZGARBOVA Marie STADLBAUER Petr OTYEPKA Michal BANÁŠ Pavel KOČA Jaroslav CHEATHAM Thomas E. JURECKA Petr ŠPONER Jiří

  Article in Periodical

  Journal of Chemical Theory and Computation, year: 2012, volume: 8, edition: 7, DOI

• Simulations of A-RNA Duplexes. The Effect of Sequence, Solute Force Field, Water Model, and Salt Concentration

  BEŠŠEOVÁ Ivana BANÁŠ Pavel KUEHROVA Petra KOSINOVA Pavlina OTYEPKA Michal ŠPONER Jiří

  Article in Periodical

  Journal of Physical Chemistry B, year: 2012, volume: 116, edition: 33, DOI

• Structure and mechanical properties of the ribosomal L1 stalk three-way junction

  RÉBLOVÁ Kamila ŠPONER Jiří LANKAŠ Filip

  Article in Periodical

  Nucleic Acids Research, year: 2012, volume: 40, edition: 13, DOI