prof. RNDr. Jiří Šponer, DrSc.

2015

• Can We Execute Stable Microsecond-Scale Atomistic Simulations of Protein-RNA Complexes?

  KREPL Miroslav HAVRILA Marek STADLBAUER Petr BANÁŠ Pavel OTYEPKA Michal PASULKA Josef ŠTEFL Richard ŠPONER Jiří

  Article in Periodical

  Journal of Chemical Theory and Computation, year: 2015, volume: 11, edition: 3, DOI

• Conformational dynamics of bacterial and human cytoplasmic models of the ribosomal A-site

  PANECKA Joanna ŠPONER Jiří TRYLSKA Joanna

  Article in Periodical

  Biochimie, year: 2015, volume: 112, edition: May, DOI

• Electron-Driven Proton Transfer Along H2O Wires Enables Photorelaxation of pi sigma* States in Chromophore-Water Clusters

  SZABLA Rafal Kazimierz ŠPONER Jiří GORA Robert W.

  Article in Periodical

  Journal of Physical Chemistry Letters, year: 2015, volume: 6, edition: 8, DOI

• Excited-state hydrogen atom abstraction initiates the photochemistry of beta-2 '-deoxycytidine

  SZABLA Rafal Kazimierz CAMPOS Jesus ŠPONEROVÁ Judit ŠPONER Jiří GORA Robert W. SUTHERLAND John D.

  Article in Periodical

  CHEMICAL SCIENCE, year: 2015, volume: 6, edition: 3, DOI

• Extended molecular dynamics of a c-kit promoter quadruplex

  ISLAM Barira STADLBAUER Petr KREPL Miroslav KOČA Jaroslav NEIDLE Stephen HAIDER Shozeb ŠPONER Jiří

  Article in Periodical

  Nucleic Acids Research, year: 2015, volume: 43, edition: 18, DOI

• Hairpins participating in folding of human telomeric sequence quadruplexes studied by standard and T-REMD simulations

  STADLBAUER Petr KUHROVÁ Petra BANÁŠ Pavel KOČA Jaroslav BUSSI Giovanni TRANTÍREK Lukáš OTYEPKA Michal ŠPONER Jiří

  Article in Periodical

  Nucleic Acids Research, year: 2015, volume: 43, edition: 20, DOI

• High-energy chemistry of formamide: A unified mechanism of nucleobase formation

  FERUS Martin NESVORNÝ David ŠPONER Jiří KUBELÍK Petr MICHALČÍKOVÁ Regina SHESTIVSKÁ Violetta ŠPONEROVÁ Judit CIVIŠ Svatopluk

  Article in Periodical

  Proceedings of the National Academy of Sciences of the United States of America, year: 2015, volume: 112, edition: 3, DOI

• Chemical Feasibility of the General Acid/Base Mechanism of glmS Ribozyme Self-Cleavage

  DUBECKÝ Matúš WALTER Nils G. ŠPONER Jiří OTYEPKA Michal BANÁŠ Pavel

  Article in Periodical

  Biopolymers, year: 2015, volume: 103, edition: 10, DOI

• Insights from 10 μs-scale molecular dynamics simulations of human telomeric quadruplexes

  ISLAM Barira STADLBAUER Petr HAIDER Shozeb ŠPONER Jiří

  Conference abstract

  Year: 2015, type: Conference abstract

• Insights into Stability and Folding of GNRA and UNCG Tetra loops Revealed by Microsecond Molecular Dynamics and Well-Tempered Metadynamics

  HALDAR Susanta KUHROVÁ Petra BANÁŠ Pavel SPIWOK Vojtěch ŠPONER Jiří HOBZA Pavel OTYEPKA Michal

  Article in Periodical

  Journal of Chemical Theory and Computation, year: 2015, volume: 11, edition: 8, DOI