prof. RNDr. Jiří Šponer, DrSc.

2017

• Structural study of the Fox-1 RRM protein hydration reveals a role for key water molecules in RRM-RNA recognition.

  KREPL Miroslav BLATTER Markus CLERY Antoine DAMBERGER Fred F ALLAIN Frederic H T ŠPONER Jiří

  Article in Periodical

  Nucleic acids research, year: 2017, DOI

• Structure of a Stable G-Hairpin

  GAJARSKÝ Martin ZIVKOVIC Martina Lenarcic STADLBAUER Petr PAGANO Bruno FIALA Radovan AMATO Jussara TOMASKA L´ubomir ŠPONER Jiří PLAVEC Janez TRANTÍREK Lukáš

  Article in Periodical

  Journal of the American Chemical Society, year: 2017, volume: 139, edition: 10, DOI

• Study of Fox-1 and SRSF1 RRMs - the molecular recognition and hydration

  KREPL Miroslav CLERY Antoine BLATTER Markus ALLAIN Frederic ŠPONER Jiří

  Conference abstract

  Year: 2017, type: Conference abstract

2016

• Assessing the Current State of Amber Force Field Modifications for DNA

  GALINDO-MURILLO Rodrigo ROBERTSON James C. ZGARBOVÁ Marie ŠPONER Jiří OTYEPKA Michal JUREČKA Petr CHEATHAM Thomas E.

  Article in Periodical

  Journal of Chemical Theory and Computation, year: 2016, volume: 12, edition: 8, DOI

• Can We Execute Reliable MM-PBSA Free Energy Computations of Relative Stabilities of Different Guanine Quadruplex Folds?

  ISLAM Barira STADLBAUER Petr NEIDLE Stephen HAIDER Shozeb ŠPONER Jiří

  Article in Periodical

  Journal of Physical Chemistry B, year: 2016, volume: 120, edition: 11, DOI

• Coarse-Grained Simulations Complemented by Atomistic Molecular Dynamics Provide New Insights into Folding and Unfolding of Human Telomeric G-Quadruplexes

  STADLBAUER Petr MAZZANTI L CRAGNOLINI T WALES DJ DERREUMAUX P PASQUALI S ŠPONER Jiří

  Article in Periodical

  Journal of Chemical Theory and Computation, year: 2016, volume: 12, edition: 12, DOI

• Comparative Assessment of Different RNA Tetranucleotides from the DFT-D3 and Force Field Perspective

  SZABLA Rafal HAVRILA Marek KRUSE Holger ŠPONER Jiří

  Article in Periodical

  Journal of Physical Chemistry B, year: 2016, volume: 120, edition: 41, DOI

• Conformations of Human Telomeric G-Quadruplex Studied Using a Nucleotide-Independent Nitroxide Label

  ZHANG Xiaojun XU Cui-Xia DI FELICE Rosa ŠPONER Jiří ISLAM Barira STADLBAUER Petr DING Yuan MAO Lingling MAO Zong-Wan QIN Peter Z.

  Article in Periodical

  Biochemistry, year: 2016, volume: 55, edition: 2, DOI

• Derivation of Reliable Geometries in QM Calculations of DNA Structures: Explicit Solvent QM/MM and Restrained Implicit Solvent QM Optimizations of G-Quadruplexes

  GKIONIS Konstantinos KRUSE Holger ŠPONER Jiří

  Article in Periodical

  Journal of Chemical Theory and Computation, year: 2016, volume: 12, edition: 4, DOI

• Emergence of the First Catalytic Oligonucleotides in a Formamide-Based Origin Scenario

  ŠPONEROVÁ Judit ŠPONER Jiří NOVÁKOVÁ Olga BRABEC Viktor ŠEDO Ondrej ZDRÁHAL Zbyněk COSTANZO Giovanna PINO Samanta SALADINO Raffaele DI MAURO Ernesto

  Article in Periodical

  Chemistry - A European Journal, year: 2016, volume: 22, edition: 11, DOI