prof. RNDr. Jiří Šponer, DrSc.

2022

• Spontaneous binding of single-stranded RNAs to RRM proteins visualized by unbiased atomistic simulations with a rescaled RNA force field

  KREPL Miroslav POKORNÁ Pavlína MLÝNSKÝ Vojtěch STADLBAUER Petr ŠPONER Jiří

  Article in Periodical

  Nucleic Acids Research, year: 2022, volume: 50, edition: 21, DOI

2021

• Insight into formation propensity of pseudocircular DNA G-hairpins

  LENARČIČ ŽIVKOVIĆ Martina GAJARSKÝ Martin BEKOVÁ Kateřina STADLBAUER P. VICHEREK Lukáš PETROVA M. FIALA Radovan ROSENBERG I. ŠPONER Jiří PLAVEC J. TRANTÍREK Lukáš

  Article in Periodical

  Nucleic acids research, year: 2021, volume: 49, edition: 4, DOI

• Nonenzymatic, Template-Free Polymerization of 3',5' Cyclic Guanosine Monophosphate on Mineral Surfaces

  ŠPONEROVÁ Judit ŠPONER Jiří VÝRAVSKÝ Jakub ŠEDO Ondrej ZDRÁHAL Zbyněk COSTANZO Giovanna DI MAURO Ernesto WUNNAVA Sreekar BRAUN Dieter MATYÁŠEK Roman KOVAŘÍK Aleš

  Article in Periodical

  ChemSystemsChem, year: 2021, volume: 3, edition: 6, DOI

• Phosphorothioate Substitutions in RNA Structure Studied by Molecular Dynamics Simulations, QM/MM Calculations, and NMR Experiments

  ZHANG Zhengyue VOGELE J. MRÁZIKOVÁ Klaudia KRUSE H. CANG X.H. WOHNERT J. KREPL M. ŠPONER Jiří

  Article in Periodical

  Journal of Physical Chemistry B, year: 2021, volume: 125, edition: 3, DOI

• Questions and Answers Related to the Prebiotic Production of Oligonucleotide Sequences from 3′,5′ Cyclic Nucleotide Precursors

  ŠPONEROVÁ Judit ŠPONER Jiří KOVAŘÍK Aleš ŠEDO Ondrej ZDRÁHAL Zbyněk COSTANZO Giovanna DI MAURO Ernesto

  Article in Periodical

  Life, year: 2021, volume: 11, edition: 8, DOI

• Residues flanking the ARK^me3T/S motif allow binding of diverse targets to the HP1 chromodomain: Insights from molecular dynamics simulations

  POKORNÁ Pavlína KREPL Miroslav ŠPONER Jiří

  Article in Periodical

  Biochimica et Biophysica Acta - General Subjects, year: 2021, volume: 1865, edition: 1, DOI

• Revealing Short-Range Imbalances in AMBER Force Field for Lone-pair…π Contacts

  MRÁZIKOVÁ Klaudia AUFFINGER Pascal ŠPONER Jiří MLÝNSKÝ Vojtěch KRUSE Holger

  Conference abstract

  Year: 2021, type: Conference abstract

2020

• Composite 5-methylations of cytosines modulate i-motif stability in a sequence-specific manner: Implications for DNA nanotechnology and epigenetic regulation of plant telomeric DNA

  ŠKOLÁKOVÁ Petra BADRI Zahra TRANTÍRKOVÁ Silvie RYNEŠ Jan ŠPONER Jiří FOJTOVÁ Miloslava FAJKUS Jiří MAREK Radek VORLÍČKOVÁ Michaela MERGNY Jean-Louis TRANTÍREK Lukáš

  Article in Periodical

  BBA - General Subjects, year: 2020, volume: 1864, edition: 9, DOI

• Short but Weak: The Z-DNA lone-pair...Pi Conundrum Challenges Standard Carbon Van der Waals Radii

  KRUSE Holger MRÁZIKOVÁ Klaudia D'ASCENZO Luigi ŠPONER Jiří AUFFINGER Pascal

  Article in Periodical

  Angewandte Chemie International Edition, year: 2020, volume: 59, edition: 38, DOI

• Stereocontrolled Synthesis of (-)-Bactobolin A

  VOJÁČKOVÁ Petra MICHALSKA Lucyna NEČAS Marek SHCHERBAKOV Dimitri BÖTTGER Erik C. ŠPONER Jiří ŠPONER Judit E. ŠVENDA Jakub

  Article in Periodical

  Journal of the American Chemical Society, year: 2020, volume: 142, edition: 16, DOI