prof. RNDr. Jiří Šponer, DrSc.

2019

• Atomic Details on Protein-Protein Recognition - Role of Side Chain Dynamics in Binding Between HP1 and H3 Proteins

  POKORNÁ Pavlína ŠPONER Jiří KREPL Miroslav BÁRTOVÁ Eva

  Conference abstract

  Year: 2019, type: Conference abstract

• DNA Damage Changes Distribution Pattern and Levels of HP1 Protein Isoforms in the Nucleolus and Increases Phosphorylation of HP1 beta-Ser88

  LEGARTOVÁ Sofia LOCHMANOVÁ Gabriela ZDRÁHAL Zbyněk KOZUBEK Stanislav ŠPONER Jiří KREPL Miroslav POKORNÁ Pavlína BÁRTOVÁ Eva

  Article in Periodical

  CELLS, year: 2019, volume: 8, edition: 9, DOI

• Lone pair-π and anion-π interactions as stabilization factors of RNA tetraloops

  MRÁZIKOVÁ Klaudia KRUSE Holger ŠPONER Jiří AUFFINGER Pascal

  Conference abstract

  Year: 2019, type: Conference abstract

• Parallel G-triplexes and G-hairpins as potential transitory ensembles in the folding of parallel-stranded DNA G-Quadruplexes

  STADLBAUER P. KUHROVA P. VICHEREK Lukáš BANAS P. OTYEPKA M. TRANTÍREK Lukáš ŠPONER Jiří

  Article in Periodical

  Nucleic acids research, year: 2019, volume: 47, edition: 14, DOI

• Prebiotic synthesis initiated in formaldehyde by laser plasma simulating high-velocity impacts

  FERUS M. PIETRUCCI F. SAITTA A.M. IVANEK O. KNIZEK A. KUBELIK P. KRUS M. JUHA L. DUDZAK R. DOSTAL J. PASTOREK A. PETERA L. HRNCIROVA J. SAEIDFIROZEH H. SHESTIVSKA V. ŠPONER Jiří SPONER J.E. RIMMER P. CIVIS S. CASSONE G.

  Article in Periodical

  ASTRONOMY & ASTROPHYSICS, year: 2019, volume: 626, edition: JUN, DOI

• QM/MM Calculations on Protein-RNA Complexes: Understanding Limitations of Classical MD Simulations and Search for Reliable Cost-Effective QM Methods.

  POKORNÁ Pavlína KREPL Miroslav ŠPONER Jiří MRÁZIKOVÁ Klaudia MLYNSKY Vojech KRUSE Holger

  Conference abstract

  Year: 2019, type: Conference abstract

• Revisiting the Potential Energy Surface of the Stacked Cytosine Dimer: FNO-CCSD(T) Interaction Energies, SAPT Decompositions, and Benchmarking

  KRUSE H. ŠPONER Jiří

  Article in Periodical

  Journal of Physical Chemistry A, year: 2019, volume: 123, edition: 42, DOI

• Role of Fine Structural Dynamics in Recognition of Histone H3 by HP1 gamma(CSD) Dimer and Ability of Force Fields to Describe Their Interaction Network

  POKORNÁ Pavlína KREPL Miroslav BARTOVA E. ŠPONER Jiří

  Article in Periodical

  Journal of Chemical Theory and Computation, year: 2019, volume: 15, edition: 10, DOI

2018

• QM/MM Calculations on Protein-RNA Complexes: Understanding Limitations of Classical MD Simulations and Search for Reliable Cost-Effective QM Methods

  POKORNÁ Pavlína KRUSE Holger KREPL Miroslav ŠPONER Jiří

  Article in Periodical

  Journal of Chemical Theory and Computation, year: 2018, volume: 14, edition: 10, DOI

2017

• A prebiotically plausible synthesis of pyrimidine beta-ribonucleosides and their phosphate derivatives involving photoanomerization

  XU Jianfeng TSANAKOPOULOU Maria MAGNANI Christopher J. SZABLA Rafal ŠPONEROVÁ Judit ŠPONER Jiří GORA Robert W. SUTHERLAND John D.

  Article in Periodical

  Nature chemistry, year: 2017, volume: 9, edition: 4, DOI