prof. RNDr. Jiří Šponer, DrSc.

2017

• Aromatic side-chain conformational switch on the surface of the RNA Recognition Motif enables RNA discrimination

  DIARRA DIT KONTÉ Nana KREPL Miroslav DAMBERGER Fred RIPPIN N DUSS O ŠPONER Jiří FRÉDÉRIC Allain

  Article in Periodical

  NATURE COMMUNICATIONS, year: 2017, volume: 8, DOI

• Coordination between the polymerase and RNase H activity of HIV-1 reverse transcriptase

  FIGIEL M KREPL Miroslav POZNANSKI J GOTAB A ŠPONER Jiří NOWOTNY Marcin

  Article in Periodical

  Nucleic Acids Research, year: 2017, volume: 45, edition: 6, DOI

• Effect of Monovalent Ion Parameters on Molecular Dynamics Simulations of G-Quadruplexes

  HAVRILA Marek STADLBAUER P. ISLAM B. OTYEPKA M. ŠPONER Jiří

  Article in Periodical

  Journal of Chemical Theory and Computation, year: 2017, volume: 13, edition: 8, DOI

• Exploring the Dynamics of Propeller Loops in Human Telomeric DNA Quadruplexes Using Atomistic Simulations

  ISLAM Barira STADLBAUER Petr GIL-LEY Alejandro PEREZ-HERNANDEZ Guillermo HAIDER Shozeb NEIDLE Stephen BUSSI Giovanni BANAS Pavel OTYEPKA Michal ŠPONER Jiří

  Article in Periodical

  Journal of Chemical Theory and Computation, year: 2017, DOI

• Folding of guanine quadruplex molecules-funnel-like mechanism or kinetic partitioning? An overview from MD simulation studies.

  ŠPONER Jiří BUSSI Giovanni STADLBAUER Petr KUHROVA Petra BANÁŠ Pavel ISLAM Barira HAIDER Shozeb NEIDLE Stephen OTYEPKA Michal

  Article in Periodical

  Biochimica et Biophysica Acta (BBA) - General Subjects, year: 2017, volume: 1861, edition: 5, DOI

• How to understand atomistic molecular dynamics simulations of RNA and protein-RNA complexes?

  ŠPONER Jiří KREPL Miroslav BANÁŠ Pavel KUHROVA P ZGARBOVÁ Marie JUREČKA Petr HAVRILA Marek OTYEPKA Michal

  Article in Periodical

  Wiley Interdisciplinary Reviews: RNA, year: 2017, volume: 8, edition: 3, DOI

• Channeling through Two Stacked Guanine Quartets of One and Two Alkali Cations in the Li+, Na+, K+, and Rb+ Series. Assessment of the Accuracy of the SIBFA Anisotropic Polarizable Molecular Mechanics Potential

  GRESH Nohad NASEEM-KHAN Sehr LAGARDERE Louis PIQUEMAL Jean-Philip ŠPONEROVÁ Judit ŠPONER Jiří

  Article in Periodical

  Journal of Physical Chemistry B, year: 2017, volume: 121, edition: 16, DOI

• MD and QM/MM Study of the Quaternary HutP Homohexamer Complex with mRNA, L-Histidine Ligand, and Mg2+

  POKORNÁ Pavlína KREPL Miroslav KRUSE Holger ŠPONER Jiří

  Article in Periodical

  Journal of Chemical Theory and Computation, year: 2017, volume: 13, edition: 11, DOI

• rRNA C-Loops: Mechanical Properties of a Recurrent Structural Motif

  DRSATA Tomas RÉBLOVÁ Kamila BESSEOVA Ivana ŠPONER Jiří LANKAS Filip

  Article in Periodical

  Journal of Chemical Theory and Computation, year: 2017, volume: 13, edition: 7, DOI

• Selectivity of major isoquinoline alkaloids from Chelidonium majus towards telomeric G-quadruplex: A study using a transition-FRET (t-FRET) assay

  NOUREINI Sakineh Kazemi ESMAEILI Hosein ABACHI Farzane KHIALI Soraia ISLAM Barira KUTA Martyna SABOURY Ali A. HOFFILLANN Marcin ŠPONER Jiří PARKINSON Gary HAIDER Shozeb

  Article in Periodical

  BIOCHIMICA ET BIOPHYSICA ACTA-GENERAL SUBJECTS, year: 2017, volume: 1861, edition: 8, DOI